Bioactivity prediction and synthesis of new 3-substituted 5-thiazolylmethylene rhodanines

Authors

  • O.L. Kobzar Institute of Bioorganic Chemistry and Petrochemistry V.P. Kukhar
  • D.M. Hodyna Institute of Bioorganic Chemistry and Petrochemistry V.P. Kukhar
  • V.O. Sinenko Institute of Bioorganic Chemistry and Petrochemistry V.P. Kukhar
  • V.V. Kovalishyn Institute of Bioorganic Chemistry and Petrochemistry V.P. Kukhar
  • O.P. Trokhimenko P.L. Shupyk National Medical Academy of Postgraduate Education, Kyiv
  • S.R. Slivchuk V.P. Kukhar Institute of Bioorganic Chemistry and Petrochemistry of the NAS of Ukraine, Kyiv
  • O.V. Muzychka Institute of Bioorganic Chemistry and Petrochemistry V.P. Kukhar

DOI:

https://doi.org/10.15407/dopovidi2020.05.070

Keywords:

antiblastic activity, molecular docking, QSAR-analysis, rhodanines, synthesis, thiazoles

Abstract

The virtual screening of a database of Z- and E-isomeric thiazole-containing derivatives of N-methyl-, N-ben zyland N-phenylethyl-substuted rhodanines is performed by regression and classification QSAR models for predicting the antiblastic activity of compounds against Hep-2 cells. The molecular docking method is used to evaluate the affinity of 3-substituted 5-thiazolylmethylene rhodanines to the ATP-binding site of potential target protein, the protein kinase Pim-1. According to the virtual screening results, ten compounds from the database were selected and synthesized by the reaction of N-substituted rhodanines with thiazol-2-carboxaldehydes, thiazol-4-carboxaldehydes and thiazol-5-carboxaldehydes. In vitro study of the compounds with N-substituted rhodanine scaffold showed the cytotoxic activity on the cell culture of human laryngeal adenocarcinoma Hep-2 which was 2.7-10 times lower in comparison with the effect of cisplatin as a reference. The results indicated that the rhodanine derivative with thiazol-2-yl and N-(4-methoxyphenyl)ethyl substituents, as well as rhodanine compound bearing thiazol-4-yl and N-4-methylbenzyl groups, exhibited the most pronounced effects. The toxicity of these compounds evaluated on hydrobiont D. magna was two orders of magnitude lower than that of cisplatin.

Downloads

Download data is not yet available.

References

Kaminskyy, D., Kryshchyshyn, A. & Lesyk, R. (2017). Recent developments with rhodanine as a scaffold of drug discovery. Expert Opin. Drug Discov., 12, No. 12, pp. 1233-1252. Doi: https://doi.org/10.1080/17460441.2017.1388370

Sawaguchi, Y., Yamazaki, R., Nishiyama, Y., Sasai, T., Mae, M., Abe, A., Yaegashi, T., Nishiyama, H. & Matsuzaki, T. (2017). Rational design of a potent pan-Pim kinases inhibitor with a rhodanine-benzoimidazole structure. Anticancer Res., 37, No. 8, pp. 4051-4057. Doi: https://doi.org/10.21873/anticanres.11790

Vatolin, S., Phillips, J. G., Jha, B. K., Govindgari, S., Hu J., Grabowski, D., Parker, Y., Lindner, D. J., Zhong, F., Distelhorst, C. W., Smith, M. R., Cotta, C., Xu, Y., Chilakala, S., Kuang, R. R., Tall, S. & Reu, F. J. (2016). Novel protein disulfide isomerase inhibitor with anticancer activity in multiple myeloma. Cancer. Res., 76, No. 11, pp. 3340-3350. Doi: https://doi.org/10.1158/0008-5472.CAN-15-3099

Li, P., Zhang, W., Jiang, H., Li, Y., Dong, C., Chen, H., Zhang, K. & Du, Z. (2018). Design, synthesis and biological evaluation of benzimidazole-rhodanine conjugates as potent topoisomerase II inhibitors. MedChem- Comm., 9, pp. 1194-1205. Doi: https://doi.org/10.1039/C8MD00278A

Bayindir, S., Caglayan, C., Karaman, M. & Gülcin, İ. (2019). The green synthesis and molecular docking of novel N-substituted rhodanines as effective inhibitors for carbonic anhydrase and acetylcholinesterase enzyme. Bioorg. Chem., 90, 103096. Doi: https://doi.org/10.1016/j.bioorg.2019.103096

Bernardo, P.H., Sivaraman, T., Wan, K.-F., Xu, J., Krishnamoorthy, J., Song, C.M., Tian, L., Chin, J.S.F., Lim, D.S.W., Mok, H.Y.K., Yu, V.C., Tong, J.C. & Chai, C.L.L. (2011). Synthesis of a rhodanine-based compound library targeting Bcl-XL and Mcl-1. Pure Appl. Chem., 83, No. 3, pp. 723-731. Doi: https://doi.org/10.1351/PAC-CON-10-10-29

Ozen, C., Unlusoy, M. C., Aliary, N., Ozturk, M. & Dundar, O. B. (2017). Thiazolidinedione or rhodamine: a study on synthesis and anticancer activity comparison of novel thiazole derivatives. J. Pharm. Pharm. Sci., 20, No. 1, pp. 415-427. Doi: https://doi.org/10.18433/J38P9R

Xia, Z., Knaak, C., Ma, J., Beharry, Z. M., Mclnnes, C., Wang, W., Kraft, A. S. & Smith, C. D. (2009). Synthesis and evaluation of novel inhibitors of Pim-1 and Pim-2 protein kinases. J. Med. Chem., 52, No. 1, pp. 74-86. Doi: https://doi.org/10.1021/jm800937p

Zhang, X., Song, M., Kundu, J. K., Lee, M.-H. & Liu, Z.-Z. (2018). PIM kinase as an executional target in cancer. J. Cancer Prev., 23, No. 3, pp. 109-116. Doi: https://doi.org/10.15430/JCP.2018.23.3.109

Choi, J. L., Cho, S. I., Do, N. Y., Kang, C. Y. & Lim, S. C. (2010). Clinical significance of the expression of galectin-3 and Pim-1 in laryngeal squamous cell carcinoma. J. Otolaryngol. Head Neck Surg., 39, No. 1, pp. 28-34.

Morris, G. M., Goodsell, D. S., Halliday, R. S., Huey, R., Hart, W. E., Belew, R. K. & Olson, A. J. (1998). Automated docking using a Lamarckian genetic algorithm and an empirical binding free energy function. J. Comput. Chem., 19, No. 14, pp. 1639-1662. Doi: https://doi.org/10.1002/(SICI)1096-987X(19981115)19:14<1639::AID-JCC10>3.0.CO;2-B

Pogacic, V., Bullock, A. N., Fedorov, O., Filippakopoulos, P., Gasser, C., Biondi, A., Meyer-Monard, S., Knapp, S. & Schwaller, J. (2007). Structural analysis identifies imidazo[1,2-b]pyridazines as PIM kinase inhibitors with in vitro antileukemic activity. Cancer Res., 67, No. 14, pp. 6916-6924. Doi: https://doi.org/10.1158/0008-5472.CAN-07-0320

Berman, H. M., Westbrook, J., Feng, Z., Gilliland, G., Bhat, T. N., Weissig, H., Shindyalov, I. N. & Bourne, P. E. (2000). The Protein Data Bank. Nucleic Acids Res., 28, No. 1, pp. 235-242. Doi: https://doi.org/10.1093/nar/28.1.235

Hanwell, M. D., Curtis, D. E., Lonie, D. C., Vandermeersch, T., Zurek, E. & Hutchison, G. R. (2012). Avogadro: an advanced semantic chemical editor, visualization, and analysis platform. J. Cheminform., 4, No. 1, 17. Doi: https://doi.org/10.1186/1758-2946-4-17

Sanner, M. F. (1999). Python: a programming language for software integration and development. J. Mol. Graph. Model., 17, pp. 57-61.

Published

28.03.2024

How to Cite

Kobzar, O. ., Hodyna, D. ., Sinenko, V. ., Kovalishyn, V. ., Trokhimenko, O. ., Slivchuk, S. ., & Muzychka, O. . (2024). Bioactivity prediction and synthesis of new 3-substituted 5-thiazolylmethylene rhodanines . Reports of the National Academy of Sciences of Ukraine, (5), 70–77. https://doi.org/10.15407/dopovidi2020.05.070

Most read articles by the same author(s)