Structural mechanisms of interaction of triphosphorylated 2'- 5'- triadenylates with S100A1 protein

Authors

  • O.Yu. Skorobogatov Institute of Molecular Biology and Genetics
  • I.Yu. Zhukov Institute of Molecular Biology and Genetics
  • Z.Yu. Tkachuk Institute of Molecular Biology and Genetics

DOI:

https://doi.org/10.15407/dopovidi2020.01.089

Keywords:

computer simulation, dephosphorylated 2'- 5' - triadenylates, NMR, S100A1 protein

Abstract

We study the structural mechanisms of interaction of dephosphorylated 2'- 5'- triadenylates with S100A1 protein by NMR spectroscopy and computer simulation methods. Earlier, it was demonstrated that 2'- 5'- triadenylates are capable of stimulating the muscle contraction via a direct or indirect interaction with the Ryano dine receptor (RyR). One of the key regulators of this intracellular Ca2+ pump is a calciumbinding protein S100A1. We assumed that the naturally occurring 2'- 5'- triadenylate may interact with S100A1 directly, by exhibiting its effect, and took a detailed look at the interaction. It is shown that dephosphorylated 2'- 5'- triadenylate binds to S100A1 within the Ca2+binding loop/linker interface, where the aminoacids within the S100A1 homodimer displayed the highest amplitude of chemical shifts. Complex formation turned out to be stabilized by the formation of two electrostatic and one hydrogen bonds. The data obtained may suggest an insight into how the naturally occurring 2'- 5'- triadenylate exhibits its purely biological function. An alternative possible scenario is the interaction between 2'- 5'- triadenylate and CAM kinase, which leads to the alteration of the latter’s functioning, which further affects the RyR. S100A1’s antagonist regarding the RyR functioning, Calmodulin, was earlier shown to interact with 2'- 5'- triadenylate, which led to the Ca2+ affinity alteration of the latter. Collectively, these data assume that 2'- 5'- triadenylate interacts with both major regulators of RyR’s Ca2+releasing activity.

Downloads

Download data is not yet available.

References

Pauwels, R. (1986). Mode of action of corticosteroids in asthma and rhinitis. Clin. Allergy, 16, pp. 281-288. Doi: https://doi.org/10.1111/j.1365-2222.1986.tb01959.x

Filippov, I. B., Tkachuk, Z. Yu. & Dubei, I. Ya. (2010). Mechanisms of vessel tone regulation by 2'- 5'- oligoadenylates. Dopov. Nac. akad. nauk Ukr., No. 6, pp. 152-157 (in Ukrainian).

Tkachuk, Z. Yu., Dubey, I. Ya., Tkachuk, L. V., Dubey, L. V., Shlykov, S. G. & Babich, L. G. (2011, July). The effect of 2'- 5'- oligoadenylates on calcium binding to Calmodulin. Proceedings of the 17th International Symposium on Ca2+Binding Proteins and Ca2+ Function in Health and Disease, Beijing, China.

Wright, N. T., Prosser, B. L., Varney, K. M., Zimmer, D. B., Schneider, M. F. & Weber, D. J. (2008). S100A1 and calmodulin compete for the same binding site on ryanodine receptor. J. Biol. Chem., 283, pp. 26676-26683. Doi: https://doi.org/10.1074/jbc.M804432200

Skorobogatov, O. Yu., Lozhko, D. N., Zhukov, I. Yu., Kozlov, O. V. & Tkachuk, Z. Yu. (2014). Study of dephosphorylated 2'- 5'- linked oligoadenylates impact on apoS100A1 protein conformation by heteronuclear NMR and circular dichroism. Biopolym. Cell., 30, pp. 279-285. Doi: https://doi.org/10.7124/bc.0008A1

Published

07.03.2023

How to Cite

Skorobogatov, O. ., Zhukov, I. ., & Tkachuk, Z. (2023). Structural mechanisms of interaction of triphosphorylated 2’- 5’- triadenylates with S100A1 protein . Reports of the National Academy of Sciences of Ukraine, (1), 89–94. https://doi.org/10.15407/dopovidi2020.01.089